资源导航

1. MiRCat: Predicts mature miRNAs and their precursors from an sRNA dataset and a genome.; 标签：General bioinformatics (pipeline)
2. Hairpin Annotation: Generates a secondary structure from an RNA sequence and highlights regions of interest using RNAplot; 标签：General bioinformatics (pipeline)
3. SiLoCo: Compares sRNA expression levels in multiple samples by grouping sRNAs into loci based on genomic location; 标签：General bioinformatics (pipeline)
4. Adapter Removal (software): Removes adaptor fragments from raw short read sequence data and outputs data to FASTA format.; 标签：General bioinformatics (pipeline)
5. Bcbio-nextgen: Python scripts and modules for automated next gen sequencing analysis. These provide a fully automated pipeline for taking sequencing results from an Illumina sequencer, converting them to standard Fastq format, aligning to a reference genome, doing SNP calling, and producing a summary ...; 标签：General bioinformatics (pipeline)
6. Filter: Produces a filtered version of an sRNA dataset, controlled by several user-defined criteria, including sequence length, abundance, complexity, transfer and ribosomal RNA removal.; 标签：General bioinformatics (pipeline)
7. MiRProf: Determines normalised expression levels of sRNAs matching known miRNAs in miRBase.; 标签：General bioinformatics (pipeline)
8. Ta-si prediction: ta-siRNA (trans-acting short interfering RNA): prediction of phased ta-siRNAs in plant sRNA datasets.; 标签：General bioinformatics (pipeline)

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